Difference between revisions of "How to Use MPI"
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== Basics == | == Basics == | ||
| − | This will give you a general overview of how to compile and execute a program that has been [[Parallel_Programming|parallelized]] with [[MPI]]. Many of the options listed below are the same for both | + | This will give you a general overview of how to compile and execute a program that has been [[Parallel_Programming|parallelized]] with [[MPI]]. Many of the options listed below are the same for both Open MPI and Intel MPI, however, be care if they do differentiate. |
== Loading the Correct Modules == | == Loading the Correct Modules == | ||
| − | === | + | === Open MPI === |
| − | To ensure that the | + | To ensure that the Open MPI module is loaded, check the output of the following command: |
$ module list | $ module list | ||
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$ module load intelmpi | $ module load intelmpi | ||
| − | If | + | If Open MPI has already been loaded, switch to IntelMPI like this: |
$ module switch openmpi intelmpi | $ module switch openmpi intelmpi | ||
| Line 40: | Line 40: | ||
|} | |} | ||
| − | You can also type the command <code>$ mpicc [options]</code> or <code>$ mpifort [options]</code>. There are a few options that come with | + | You can also type the command <code>$ mpicc [options]</code> or <code>$ mpifort [options]</code>. There are a few options that come with Open MPI, however, options are more important for running your program. The compiler options might be useful to fetch more information about the Open MPI module you're using. |
{| class="wikitable" style="width: 40%;" | {| class="wikitable" style="width: 40%;" | ||
|Options || Function | |Options || Function | ||
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| -showme:help || print a short help message about the usage and lists all compiler options | | -showme:help || print a short help message about the usage and lists all compiler options | ||
|- | |- | ||
| − | | -showme:version || show | + | | -showme:version || show Open MPI version |
|} | |} | ||
Revision as of 12:32, 4 April 2018
Basics
This will give you a general overview of how to compile and execute a program that has been parallelized with MPI. Many of the options listed below are the same for both Open MPI and Intel MPI, however, be care if they do differentiate.
Loading the Correct Modules
Open MPI
To ensure that the Open MPI module is loaded, check the output of the following command:
$ module list
In case it has not been loaded yet, type
$ module load openmpi
If you are currently using IntelMPIt, type
$ module switch intelmpi openmpi
IntelMPI
Look for "intelmpi" in the output of this command:
$ module list
In case it did not appear in the output, you have to load the module by typing
$ module load intelmpi
If Open MPI has already been loaded, switch to IntelMPI like this:
$ module switch openmpi intelmpi
How to Compile MPI Code
There are two MPI compilers, one for C/C++ and one for Fortran, but they share most command line options. Depending on whether your code is written in C or Fortran, follow the instructions in one of the tables below. Make sure to replace the arguments inside <…> with specific values.
OpenMPI
Use the following command to specify the program you would like to compile (replace <src_file> with a path to your code, e. g. ./myprog.c).
| C/C++ | Fortran |
$ mpicc <src_file> |
$ mpifort <src_file>
|
You can also type the command $ mpicc [options] or $ mpifort [options]. There are a few options that come with Open MPI, however, options are more important for running your program. The compiler options might be useful to fetch more information about the Open MPI module you're using.
| Options | Function |
| -showme:help | print a short help message about the usage and lists all compiler options |
| -showme:version | show Open MPI version |
How to Run an MPI Executable
Ensure that your the correct MPI module is loaded (see here).
Don’t forget to put the “-np” or “-n” option as explained below. All the other options listed below are not mandatory.
| Option | Function |
| -np <num_procs> or -n <num_procs> | number of processes to run |
| -path <path> | look for executables in the directory specified |
| -q or –quiet | suppress helpful messages |
| -output-filename <name> | redirects output into the file <name>.<rank> |
| --help | lists all options available with an explanation |